Details of RNA Modification Site of hg38
mod ID m6A_site_845000 mod Site chr9:132897378-132897379:-
mod Type m6A Sequence TTGTGTTTTTATTAAGTGGAACTTCCTATATTCTGGCTGGT
Motif Score 3.37338095238095
RNA Structure Motif ..........((((......)))).......
 MFE -1.10
Support Dataset Num 3 Support sub-Dataset Num 3
Support Dataset List GSE107954, GSE83438, GSE97408
Support sub-Dataset List

GSM2884197, GSM2203052, GSM2564019
Cell/Tissue List CD34, Huh7, NB4
Seq Type List m6A-seq,MeRIP-seq
Transcript ID List ENST00000644255.1,ENST00000644184.1,ENST00000643275.1,ENST00000644786.1,ENST00000643875.1,ENST00000644882.1,ENST00000645901.1,ENST00000440111.6,ENST00000642261.1,ENST00000646391.1,ENST00000647279.1,ENST00000643072.1,ENST00000642617.1,ENST00000643583.1,ENST00000298552.8,ENST00000643625.1,ENST00000642627.1,ENST00000647534.1,ENST00000647262.1,ENST00000545250.5,ENST00000646625.1,ENST00000644319.1,ENST00000642811.1,ENST00000644097.1
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000644255.1ENSG00000165699.14TSC1nonsense_mediated_decayintron-20
ENST00000644184.1ENSG00000165699.14TSC1protein_codingintron-9
ENST00000643275.1ENSG00000165699.14TSC1nonsense_mediated_decayintron-6
ENST00000644786.1ENSG00000165699.14TSC1processed_transcriptintron-4
ENST00000643875.1ENSG00000165699.14TSC1protein_codingintron-21
ENST00000644882.1ENSG00000165699.14TSC1retained_intronintron-7
ENST00000645901.1ENSG00000165699.14TSC1retained_intronintron-19
ENST00000440111.6ENSG00000165699.14TSC1protein_codingintron-19
ENST00000642261.1ENSG00000165699.14TSC1nonsense_mediated_decayutr3-7
ENST00000646391.1ENSG00000165699.14TSC1nonsense_mediated_decayintron-20
ENST00000647279.1ENSG00000165699.14TSC1nonsense_mediated_decayintron-20
ENST00000643072.1ENSG00000165699.14TSC1protein_codingintron-20
ENST00000642617.1ENSG00000165699.14TSC1protein_codingintron-21
ENST00000643583.1ENSG00000165699.14TSC1protein_codingintron-21
ENST00000298552.8ENSG00000165699.14TSC1protein_codingintron-21
ENST00000643625.1ENSG00000165699.14TSC1nonsense_mediated_decayintron-6
ENST00000642627.1ENSG00000165699.14TSC1protein_codingintron-21
ENST00000647534.1ENSG00000165699.14TSC1retained_intronintron-11
ENST00000647262.1ENSG00000165699.14TSC1retained_intronintron-7
ENST00000545250.5ENSG00000165699.14TSC1protein_codingintron-18
ENST00000646625.1ENSG00000165699.14TSC1protein_codingintron-21
ENST00000644319.1ENSG00000165699.14TSC1retained_intronintron-11
ENST00000642811.1ENSG00000165699.14TSC1nonsense_mediated_decayintron-20
ENST00000644097.1ENSG00000165699.14TSC1protein_codingintron-21
Conserved Sites na
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID 30065315, 27773535, 29290617

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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