| mod ID | m6A_site_847763 | mod Site | chr9:136721641-136721642:- | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| mod Type | m6A | Sequence |
CAGCAAAGGCCACTGCCTGGACATGAGACACACACCACACC |
||||||||
| Motif Score | 3.64304761904762 | ||||||||||
| RNA Structure Motif |
.((((....)))).................. |
MFE | -4.60 | ||||||||
| Support Dataset Num | 11 | Support sub-Dataset Num | 30 | ||||||||
| Support Dataset List | |||||||||||
| Support sub-Dataset List |
GSM2739506, GSM2739507, GSM2739522, GSM2739523, GSM2739534, GSM2739535, GSM2991403, GSM2987449, GSM908337, GSM1135021, GSM1135032, GSM1594131, GSM1982257, GSM2283215, GSM2324298, GSM2324308, GSM2324310, GSM2332988, GSM2460345, GSM2460348, GSM2460350, GSM2460360, GSM2754211, GSM2754213, GSM2754214, GSM2754220, GSM2754235, GSM2754237, GSM2464921, GSM2464923 |
||||||||||
| Cell/Tissue List |
HeLa, HepG2, GM12878, A549, CD4T, peripheral-blood, HEK293T, iSLK, TREX, MSC, endometrial |
||||||||||
| Seq Type List | m6A-seq,MeRIP-seq | ||||||||||
| Transcript ID List | ENST00000414282.5 | ||||||||||
| Transcript Detail |
|
||||||||||
| Conserved Sites | na | ||||||||||
| snoRNA Num | 0 | snoRNA Guide Site | na | ||||||||
| snoRNA Guide Detail | na | ||||||||||
| writer Num | 0 | Writer Name List | na | ||||||||
| Writer Catalysis Detail | na | ||||||||||
| PubMed ID |
♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.
♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.
♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.
♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.
♥ Click the "Show Detail" button to show detailed list and click again to hide it.
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School of Life Science,
Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1