| mod ID | m6A_site_858626 | mod Site | chrX:48707469-48707470:+ | |||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| mod Type | m6A | Sequence |
CATGGAGAGCACCCGCATGGACTCCAACTTTGGCCTGGCTG |
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| Motif Score | 4.06504166666667 | |||||||||||||||||||||||||
| RNA Structure Motif |
.(((...((....)).)))............ |
MFE | -2.40 | |||||||||||||||||||||||
| Support Dataset Num | 5 | Support sub-Dataset Num | 10 | |||||||||||||||||||||||
| Support Dataset List | ||||||||||||||||||||||||||
| Support sub-Dataset List |
GSM3396438, GSM908331, GSM1135020, GSM1135021, GSM1135032, GSM1135033, GSM2417478, GSM2460345, GSM2460347, GSM2460350 |
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| Cell/Tissue List |
HEK293T, HepG2, HeLa, HEK293A-TOA, iSLK |
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| Seq Type List | MeRIP-seq,m6A-seq | |||||||||||||||||||||||||
| Transcript ID List | ENST00000337852.10,ENST00000376687.3,ENST00000462786.1,ENST00000482260.1 | |||||||||||||||||||||||||
| Transcript Detail |
|
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| Conserved Sites | mm10:m6A_site_655823;susScr11:m6A_site_143272 | |||||||||||||||||||||||||
| snoRNA Num | 0 | snoRNA Guide Site | na | |||||||||||||||||||||||
| snoRNA Guide Detail | na | |||||||||||||||||||||||||
| writer Num | 0 | Writer Name List | na | |||||||||||||||||||||||
| Writer Catalysis Detail | na | |||||||||||||||||||||||||
| PubMed ID |
♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.
♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.
♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.
♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.
♥ Click the "Show Detail" button to show detailed list and click again to hide it.
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School of Life Science,
Sun Yat-sen University, China.
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