Details of RNA Modification Site of hg38
mod ID m6A_site_858678 mod Site chrX:48806202-48806203:+
mod Type m6A Sequence GAGCAGAGAACATTACCTGAACTGAGGCGGGCTAGGGAAGA
Motif Score 3.37338095238095
RNA Structure Motif ..........((((..(((...)))..))))
 MFE -4.60
Support Dataset Num 3 Support sub-Dataset Num 4
Support Dataset List GSE102493, GSE83438, GSE85724
Support sub-Dataset List

GSM2991403, GSM2203052, GSM2283210, GSM2283211
Cell/Tissue List HeLa, Huh7, Jurkat
Seq Type List m6A-seq,MeRIP-seq
Transcript ID List ENST00000647398.1,ENST00000477528.5,ENST00000376643.6,ENST00000426196.6,ENST00000462730.5,ENST00000643934.1,ENST00000334136.10,ENST00000376610.6,ENST00000469223.5,ENST00000643374.1,ENST00000483656.5,ENST00000443563.5,ENST00000376619.6,ENST00000476625.5,ENST00000468949.1,ENST00000644068.1,ENST00000477561.5,ENST00000646703.1,ENST00000440653.1,ENST00000643659.1
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000647398.1ENSG00000094631.19HDAC6nonsense_mediated_decayintron-4
ENST00000477528.5ENSG00000094631.19HDAC6retained_intronexon-6
ENST00000376643.6ENSG00000094631.19HDAC6protein_codingintron-6
ENST00000426196.6ENSG00000094631.19HDAC6protein_codingintron-6
ENST00000462730.5ENSG00000094631.19HDAC6protein_codingutr3-6
ENST00000643934.1ENSG00000094631.19HDAC6protein_codingintron-5
ENST00000334136.10ENSG00000094631.19HDAC6protein_codingintron-6
ENST00000376610.6ENSG00000094631.19HDAC6protein_codingintron-6
ENST00000469223.5ENSG00000094631.19HDAC6processed_transcriptintron-5
ENST00000643374.1ENSG00000094631.19HDAC6protein_codingintron-6
ENST00000483656.5ENSG00000094631.19HDAC6processed_transcriptintron-5
ENST00000443563.5ENSG00000094631.19HDAC6protein_codingintron-6
ENST00000376619.6ENSG00000094631.19HDAC6protein_codingintron-6
ENST00000476625.5ENSG00000094631.19HDAC6protein_codingutr3-5
ENST00000468949.1ENSG00000094631.19HDAC6retained_intronintron-4
ENST00000644068.1ENSG00000094631.19HDAC6protein_codingintron-6
ENST00000477561.5ENSG00000094631.19HDAC6processed_transcriptintron-6
ENST00000646703.1ENSG00000094631.19HDAC6protein_codingintron-3
ENST00000440653.1ENSG00000094631.19HDAC6protein_codingintron-5
ENST00000643659.1ENSG00000094631.19HDAC6processed_transcriptexon-6
Conserved Sites na
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID 29507755, 27773535, 27371828

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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