| mod ID | m6A_site_860539 | mod Site | chrX:53413304-53413305:- | |||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| mod Type | m6A | Sequence |
AATGGTGAAGGCTGAAGAGGACACACAGTTTAATTACCATC |
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| Motif Score | 3.64304761904762 | |||||||||||||||||||||||||
| RNA Structure Motif |
...((((((...........))))))..... |
MFE | -2.80 | |||||||||||||||||||||||
| Support Dataset Num | 10 | Support sub-Dataset Num | 36 | |||||||||||||||||||||||
| Support Dataset List | ||||||||||||||||||||||||||
| Support sub-Dataset List |
GSM2739502, GSM2739503, GSM2739506, GSM2739507, GSM2991403, GSM2884195, GSM2884197, GSM2884199, GSM3396437, GSM3396438, GSM1166139, GSM1166140, GSM1166141, GSM1166142, GSM1339393, GSM1339401, GSM1339403, GSM1339405, GSM1339407, GSM1339427, GSM1723347, GSM1723351, GSM1982263, GSM2010454, GSM2203043, GSM2203044, GSM2203047, GSM2203051, GSM2203052, GSM2203055, GSM2203056, GSM2203059, GSM2203060, GSM2203063, GSM2203064, GSM2464917 |
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| Cell/Tissue List |
HeLa, CD34, HEK293T, U2OS, hNPCs, fibroblasts, A549, LCLs, H1299, MM6, Huh7, endometrial |
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| Seq Type List | m6A-seq,MeRIP-seq | |||||||||||||||||||||||||
| Transcript ID List | ENST00000322213.8,ENST00000428014.1,ENST00000375340.10,ENST00000463684.1 | |||||||||||||||||||||||||
| Transcript Detail |
|
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| Conserved Sites | mm10:m6A_site_671282;rheMac8:m6A_site_59808 | |||||||||||||||||||||||||
| snoRNA Num | 0 | snoRNA Guide Site | na | |||||||||||||||||||||||
| snoRNA Guide Detail | na | |||||||||||||||||||||||||
| writer Num | 0 | Writer Name List | na | |||||||||||||||||||||||
| Writer Catalysis Detail | na | |||||||||||||||||||||||||
| PubMed ID |
♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.
♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.
♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.
♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.
♥ Click the "Show Detail" button to show detailed list and click again to hide it.
© 2023, Qu Lab.
School of Life Science,
Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1