| mod ID | m6A_site_862449 | mod Site | chrX:67728904-67728905:+ | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| mod Type | m6A | Sequence |
AAGCATAAAAACTCAATGGAACTGACTGAGATTTACCACAG |
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| Motif Score | 3.37338095238095 | ||||||||||||||||||||
| RNA Structure Motif |
......((((...........))))...... |
MFE | -1.60 | ||||||||||||||||||
| Support Dataset Num | 9 | Support sub-Dataset Num | 35 | ||||||||||||||||||
| Support Dataset List | |||||||||||||||||||||
| Support sub-Dataset List |
GSM2739506, GSM2739507, GSM2739522, GSM2739523, GSM2739534, GSM2739535, GSM2991403, GSM3582052, GSM3582053, GSM3582054, GSM1135021, GSM1272358, GSM1272360, GSM1272366, GSM1272368, GSM1339393, GSM1339395, GSM1339403, GSM1339407, GSM1339425, GSM1339427, GSM1339429, GSM1339439, GSM1828596, GSM2010454, GSM2460352, GSM2460354, GSM2460356, GSM2460358, GSM2464905, GSM2464907, GSM2464909, GSM2464911, GSM2464917, GSM2464919 |
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| Cell/Tissue List |
HeLa, A549, H1A, H1B, hNPCs, hESCs, fibroblasts, MM6, MSC, TIME, endometrial |
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| Seq Type List | m6A-seq,MeRIP-seq,m6A-CLIP/IP | ||||||||||||||||||||
| Transcript ID List | ENST00000612452.4,ENST00000374690.8,ENST00000396044.7 | ||||||||||||||||||||
| Transcript Detail |
|
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| Conserved Sites | na | ||||||||||||||||||||
| snoRNA Num | 0 | snoRNA Guide Site | na | ||||||||||||||||||
| snoRNA Guide Detail | na | ||||||||||||||||||||
| writer Num | 0 | Writer Name List | na | ||||||||||||||||||
| Writer Catalysis Detail | na | ||||||||||||||||||||
| PubMed ID |
♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.
♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.
♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.
♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.
♥ Click the "Show Detail" button to show detailed list and click again to hide it.
© 2023, Qu Lab.
School of Life Science,
Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1