| mod ID | m6A_site_864367 | mod Site | chrX:73214247-73214248:- | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| mod Type | m6A | Sequence |
AGGTGGCGATACTGATGAGGACTCAGAGGCAGACCGTCCAA |
||||||||
| Motif Score | 4.06504166666667 | ||||||||||
| RNA Structure Motif |
((....((((.......))))..))...... |
MFE | -3.80 | ||||||||
| Support Dataset Num | 8 | Support sub-Dataset Num | 19 | ||||||||
| Support Dataset List | |||||||||||
| Support sub-Dataset List |
GSM3396437, GSM3396438, GSM3582054, GSM928399, GSM928401, GSM1166139, GSM1166142, GSM1272358, GSM1272360, GSM1272362, GSM1272364, GSM1272366, GSM1272368, GSM1339393, GSM1339395, GSM1339401, GSM1828594, GSM2283211, GSM2283213 |
||||||||||
| Cell/Tissue List |
HEK293T, A549, U2OS, H1A, H1B, hNPCs, hESCs, CD8T, Jurkat |
||||||||||
| Seq Type List | MeRIP-seq,m6A-seq,m6A-CLIP/IP | ||||||||||
| Transcript ID List | ENST00000373517.3 | ||||||||||
| Transcript Detail |
|
||||||||||
| Conserved Sites | mm10:m6A_site_665861 | ||||||||||
| snoRNA Num | 0 | snoRNA Guide Site | na | ||||||||
| snoRNA Guide Detail | na | ||||||||||
| writer Num | 0 | Writer Name List | na | ||||||||
| Writer Catalysis Detail | na | ||||||||||
| PubMed ID |
♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.
♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.
♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.
♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.
♥ Click the "Show Detail" button to show detailed list and click again to hide it.
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School of Life Science,
Sun Yat-sen University, China.
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