Details of RNA Modification Site of hg38
mod ID m6A_site_877612 mod Site chrX:154350310-154350311:-
mod Type m6A Sequence GGCTGGGCTCACACTGATGGACCGGCAAAATGGGGAGGGCC
Motif Score 3.62240476190476
RNA Structure Motif ((.(((......))).)).............
 MFE -2.10
Support Dataset Num 2 Support sub-Dataset Num 4
Support Dataset List GSE102493, GSE93911
Support sub-Dataset List

GSM2739503, GSM2991399, GSM2464911, GSM2464919
Cell/Tissue List HeLa, endometrial
Seq Type List m6A-seq
Transcript ID List ENST00000498491.5,ENST00000360319.9,ENST00000369856.8,ENST00000498411.1,ENST00000422373.5,ENST00000369850.9,ENST00000462590.1,ENST00000420627.5,ENST00000490936.5,ENST00000610817.4
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000498491.5ENSG00000196924.16FLNAprocessed_transcriptintron-2
ENST00000360319.9ENSG00000196924.16FLNAprotein_codingintron-42
ENST00000369856.8ENSG00000196924.16FLNAprotein_codingintron-43
ENST00000498411.1ENSG00000196924.16FLNAprocessed_transcriptintron-1
ENST00000422373.5ENSG00000196924.16FLNAprotein_codingintron-43
ENST00000369850.9ENSG00000196924.16FLNAprotein_codingintron-44
ENST00000462590.1ENSG00000196924.16FLNAretained_intronexon-1
ENST00000420627.5ENSG00000196924.16FLNAnonsense_mediated_decayintron-43
ENST00000490936.5ENSG00000196924.16FLNAretained_intronexon-19
ENST00000610817.4ENSG00000196924.16FLNAprotein_codingintron-40
Conserved Sites na
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID 29507755, 30154548

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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