Details of RNA Modification Site of hg38
mod ID m6A_site_877631 mod Site chrX:154352863-154352864:-
mod Type m6A Sequence GGTGGACATCAACACAGAGGACCTGGAGGACGGGACGTGCA
Motif Score 3.62240476190476
RNA Structure Motif ................((((.....))))..
 MFE -4.70
Support Dataset Num 5 Support sub-Dataset Num 13
Support Dataset List
Support sub-Dataset List

GSM2739502, GSM2739503, GSM2991399, GSM2991400, GSM2884195, GSM908331, GSM2332990, GSM2464907, GSM2464911, GSM2464915, GSM2464917, GSM2464919, GSM2464931
Cell/Tissue List

HeLa, CD34, HepG2, HEK293T, endometrial, HEC-1-A
Seq Type List m6A-seq
Transcript ID List ENST00000369850.9,ENST00000498411.1,ENST00000369856.8,ENST00000490936.5,ENST00000466325.1,ENST00000610817.4,ENST00000420627.5,ENST00000444578.1,ENST00000360319.9,ENST00000415241.1,ENST00000422373.5
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000369850.9ENSG00000196924.16FLNAprotein_codingcds-39
ENST00000498411.1ENSG00000196924.16FLNAprocessed_transcriptexon-1
ENST00000369856.8ENSG00000196924.16FLNAprotein_codingcds-38
ENST00000490936.5ENSG00000196924.16FLNAretained_intronexon-15
ENST00000466325.1ENSG00000196924.16FLNAretained_intronexon-2
ENST00000610817.4ENSG00000196924.16FLNAprotein_codingintron-37
ENST00000420627.5ENSG00000196924.16FLNAnonsense_mediated_decayutr3-38
ENST00000444578.1ENSG00000196924.16FLNAprotein_codingcds-2
ENST00000360319.9ENSG00000196924.16FLNAprotein_codingcds-37
ENST00000415241.1ENSG00000196924.16FLNAnonsense_mediated_decayutr3-4
ENST00000422373.5ENSG00000196924.16FLNAprotein_codingcds-38
Conserved Sites na
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

♥ Click the "Show Detail" button to show detailed list and click again to hide it.

© 2023, Qu Lab. School of Life Science, Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1