| mod ID | m6A_site_878379 | mod Site | chrX:154762934-154762935:+ | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| mod Type | m6A | Sequence |
GGTCGTTCCCTCGGCTGTGGACCGGGCGGCACGCACGCGGT |
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| Motif Score | 3.62240476190476 | ||||||||||||||||||||||||||||||
| RNA Structure Motif |
..(((((((.......))))).))....... |
MFE | -7.70 | ||||||||||||||||||||||||||||
| Support Dataset Num | 11 | Support sub-Dataset Num | 33 | ||||||||||||||||||||||||||||
| Support Dataset List | |||||||||||||||||||||||||||||||
| Support sub-Dataset List |
GSM2739503, GSM2739507, GSM2739534, GSM2739535, GSM2884195, GSM2884197, GSM2884199, GSM2987448, GSM2987449, GSM3582046, GSM3582047, GSM3582048, GSM3582052, GSM3582053, GSM3582054, GSM908331, GSM1339403, GSM1982257, GSM1982263, GSM2283211, GSM2283212, GSM2283214, GSM2324298, GSM2417477, GSM2417478, GSM2417479, GSM2460345, GSM2460352, GSM2460354, GSM2460356, GSM2460360, GSM2754224, GSM2754248 |
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| Cell/Tissue List |
HeLa, CD34, HepG2, A549, fibroblasts, H1299, Jurkat, CD4T, peripheral-blood, HEK293A-TOA, iSLK, MSC, TIME, TREX |
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| Seq Type List | m6A-seq,MeRIP-seq | ||||||||||||||||||||||||||||||
| Transcript ID List | ENST00000475423.1,ENST00000620277.4,ENST00000413910.5,ENST00000473552.1,ENST00000369550.10 | ||||||||||||||||||||||||||||||
| Transcript Detail |
|
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| Conserved Sites | na | ||||||||||||||||||||||||||||||
| snoRNA Num | 0 | snoRNA Guide Site | na | ||||||||||||||||||||||||||||
| snoRNA Guide Detail | na | ||||||||||||||||||||||||||||||
| writer Num | 0 | Writer Name List | na | ||||||||||||||||||||||||||||
| Writer Catalysis Detail | na | ||||||||||||||||||||||||||||||
| PubMed ID |
♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.
♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.
♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.
♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.
♥ Click the "Show Detail" button to show detailed list and click again to hide it.
© 2023, Qu Lab.
School of Life Science,
Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1