| mod ID | m6A_site_90151 | mod Site | chr10:1012634-1012635:+ | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| mod Type | m6A | Sequence |
AAAGAAAAGAATACACAGGGACCCAGGATGCCGCGAACTGC |
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| Motif Score | 3.62240476190476 | |||||||||||||||
| RNA Structure Motif |
............((.((....).).)).... |
MFE | -1.10 | |||||||||||||
| Support Dataset Num | 9 | Support sub-Dataset Num | 29 | |||||||||||||
| Support Dataset List | ||||||||||||||||
| Support sub-Dataset List |
GSM2884195, GSM2884197, GSM2884199, GSM1339393, GSM1339405, GSM1339407, GSM1723347, GSM1723351, GSM2010454, GSM2010456, GSM2203047, GSM2203052, GSM2203060, GSM2283210, GSM2283211, GSM2283212, GSM2283213, GSM2283214, GSM2283215, GSM2324298, GSM2464905, GSM2464907, GSM2464909, GSM2464911, GSM2464913, GSM2464917, GSM2464919, GSM2564019, GSM2564022 |
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| Cell/Tissue List |
CD34, hNPCs, fibroblasts, LCLs, MM6, Huh7, Jurkat, CD4T, peripheral-blood, endometrial, NB4 |
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| Seq Type List | m6A-seq,MeRIP-seq | |||||||||||||||
| Transcript ID List | ENST00000360803.9,ENST00000483839.2 | |||||||||||||||
| Transcript Detail |
|
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| Conserved Sites | mm10:m6A_site_152843;rheMac8:m6A_site_56257 | |||||||||||||||
| snoRNA Num | 0 | snoRNA Guide Site | na | |||||||||||||
| snoRNA Guide Detail | na | |||||||||||||||
| writer Num | 0 | Writer Name List | na | |||||||||||||
| Writer Catalysis Detail | na | |||||||||||||||
| PubMed ID |
♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.
♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.
♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.
♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.
♥ Click the "Show Detail" button to show detailed list and click again to hide it.
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School of Life Science,
Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1