| mod ID | m6A_site_92887 | mod Site | chr10:13109190-13109191:+ | ||||||||||||||||||||||||||||||||||||||||||||||||
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| mod Type | m6A | Sequence |
AGTGAAAGCACAGGAAATGGACCCCCCCACCTGGCCCACCC |
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| Motif Score | 3.62240476190476 | ||||||||||||||||||||||||||||||||||||||||||||||||||
| RNA Structure Motif |
..((.((((...(((......))))))))). |
MFE | -9.20 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Support Dataset Num | 12 | Support sub-Dataset Num | 26 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Support Dataset List | |||||||||||||||||||||||||||||||||||||||||||||||||||
| Support sub-Dataset List |
GSM2739502, GSM2739522, GSM2987447, GSM2987449, GSM3396437, GSM3396438, GSM3582053, GSM3582054, GSM1339401, GSM1339405, GSM1908206, GSM1908208, GSM1982263, GSM2010454, GSM2203043, GSM2203047, GSM2203051, GSM2203055, GSM2203056, GSM2203059, GSM2283210, GSM2283213, GSM2283214, GSM2460362, GSM2464911, GSM2464931 |
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| Cell/Tissue List |
HeLa, HepG2, HEK293T, A549, fibroblasts, MT4, H1299, MM6, Huh7, Jurkat, CD4T, TREX, endometrial, HEC-1-A |
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| Seq Type List | m6A-seq,MeRIP-seq | ||||||||||||||||||||||||||||||||||||||||||||||||||
| Transcript ID List | ENST00000263036.9,ENST00000378748.7,ENST00000487935.1,ENST00000378757.6,ENST00000482140.5,ENST00000378752.7,ENST00000430081.5,ENST00000378747.8,ENST00000378764.6 | ||||||||||||||||||||||||||||||||||||||||||||||||||
| Transcript Detail |
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| Conserved Sites | mm10:m6A_site_322402;panTro5:m6A_site_7986 | ||||||||||||||||||||||||||||||||||||||||||||||||||
| snoRNA Num | 0 | snoRNA Guide Site | na | ||||||||||||||||||||||||||||||||||||||||||||||||
| snoRNA Guide Detail | na | ||||||||||||||||||||||||||||||||||||||||||||||||||
| writer Num | 1 | Writer Name List | METTL3 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Writer Catalysis Detail |
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| PubMed ID |
♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.
♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.
♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.
♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.
♥ Click the "Show Detail" button to show detailed list and click again to hide it.
© 2023, Qu Lab.
School of Life Science,
Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1