| mod ID | m6A_site_99347 | mod Site | chr10:44378525-44378526:- | |||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| mod Type | m6A | Sequence |
AGGGGGCCTTAACCATGAGGACCAGGTGTGTGTGTGGGGTG |
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| Motif Score | 3.62240476190476 | |||||||||||||||||||||||||||||||||||
| RNA Structure Motif |
((((...((....))...))))......... |
MFE | -4.60 | |||||||||||||||||||||||||||||||||
| Support Dataset Num | 6 | Support sub-Dataset Num | 21 | |||||||||||||||||||||||||||||||||
| Support Dataset List | ||||||||||||||||||||||||||||||||||||
| Support sub-Dataset List |
GSM3396437, GSM1272358, GSM1272360, GSM1272362, GSM1272366, GSM1272368, GSM1339395, GSM1339405, GSM1339407, GSM2417477, GSM2417478, GSM2417479, GSM2460352, GSM2460354, GSM2464905, GSM2464907, GSM2464909, GSM2464911, GSM2464915, GSM2464917, GSM2464919 |
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| Cell/Tissue List |
HEK293T, H1A, H1B, hESCs, fibroblasts, HEK293A-TOA, MSC, endometrial |
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| Seq Type List | MeRIP-seq,m6A-seq | |||||||||||||||||||||||||||||||||||
| Transcript ID List | ENST00000395794.2,ENST00000374426.6,ENST00000395795.5,ENST00000395793.7,ENST00000374429.6,ENST00000343575.10 | |||||||||||||||||||||||||||||||||||
| Transcript Detail |
|
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| Conserved Sites | na | |||||||||||||||||||||||||||||||||||
| snoRNA Num | 0 | snoRNA Guide Site | na | |||||||||||||||||||||||||||||||||
| snoRNA Guide Detail | na | |||||||||||||||||||||||||||||||||||
| writer Num | 0 | Writer Name List | na | |||||||||||||||||||||||||||||||||
| Writer Catalysis Detail | na | |||||||||||||||||||||||||||||||||||
| PubMed ID |
♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.
♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.
♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.
♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.
♥ Click the "Show Detail" button to show detailed list and click again to hide it.
© 2023, Qu Lab.
School of Life Science,
Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1