Details of RNA Modification Site of hg38
mod ID m7G_site_565 mod Site chr20:37203945-37203946:+
mod Type m7G Sequence AGGCTGACCTGAGGAGCATCGTGGAGGAGATTGAGGTGTGA
Motif Score noScore
RNA Structure Motif ..(((.((.....((......))..)).)))
 MFE -3.30
Support Dataset Num 2 Support sub-Dataset Num 2
Support Dataset List GSE112181, GSE112276
Support sub-Dataset List GSE112181, GSE112276
Cell/Tissue List A549, HeLa, HepG2
Seq Type List BoRed-seq&m7G-RIP-seq,m7G-seq
Transcript ID List ENST00000373632.8,ENST00000462163.1,ENST00000456102.5,ENST00000373622.9,ENST00000237530.11
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000373632.8ENSG00000118705.17RPN2protein_codingcds-6
ENST00000462163.1ENSG00000118705.17RPN2nonsense_mediated_decaycds-4
ENST00000456102.5ENSG00000118705.17RPN2protein_codingcds-3
ENST00000373622.9ENSG00000118705.17RPN2protein_codingcds-4
ENST00000237530.11ENSG00000118705.17RPN2protein_codingcds-5
Conserved Sites na
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID 31031083, 31031084

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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