Details of RNA Modification Site of hg38
mod ID m7G_site_574 mod Site chr20:56370655-56370656:-
mod Type m7G Sequence CCTCCCTCCGTTTTCAGGAGGACCACTCTCTGTGGCACCCT
Motif Score noScore
RNA Structure Motif ((((.......))))..((((.....)))).
 MFE -10.50
Support Dataset Num 2 Support sub-Dataset Num 2
Support Dataset List GSE112181, GSE112276
Support sub-Dataset List GSE112181, GSE112276
Cell/Tissue List A549, HeLa, HepG2
Seq Type List BoRed-seq&m7G-RIP-seq,m7G-seq
Transcript ID List ENST00000395913.7,ENST00000395915.7,ENST00000312783.10,ENST00000395907.5,ENST00000395914.5,ENST00000347343.6,ENST00000395911.5,ENST00000371356.6
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000395913.7ENSG00000087586.17AURKAprotein_codingcds-8
ENST00000395915.7ENSG00000087586.17AURKAprotein_codingcds-8
ENST00000312783.10ENSG00000087586.17AURKAprotein_codingcds-9
ENST00000395907.5ENSG00000087586.17AURKAprotein_codingcds-8
ENST00000395914.5ENSG00000087586.17AURKAprotein_codingcds-9
ENST00000347343.6ENSG00000087586.17AURKAprotein_codingcds-8
ENST00000395911.5ENSG00000087586.17AURKAprotein_codingcds-9
ENST00000371356.6ENSG00000087586.17AURKAprotein_codingcds-9
Conserved Sites na
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID 31031083, 31031084

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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