| mod ID | Nm_site_1003 | mod Site | chr11:65499673-65499674:+ | |||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| mod Type | Cm | Sequence |
TGAAGTGGAAAACTGGAAGACAGAAGTACGGGAAGGCGAAG |
|||||||||||||||||||||||||||||||||
| Motif Score | noScore | |||||||||||||||||||||||||||||||||||
| RNA Structure Motif |
.......(((.....)))............. |
MFE | -2.10 | |||||||||||||||||||||||||||||||||
| Support Dataset Num | 1 | Support sub-Dataset Num | 1 | |||||||||||||||||||||||||||||||||
| Support Dataset List | GSE90164 | |||||||||||||||||||||||||||||||||||
| Support sub-Dataset List | GSE90164 | |||||||||||||||||||||||||||||||||||
| Cell/Tissue List | HeLa | |||||||||||||||||||||||||||||||||||
| Seq Type List | Nm-seq | |||||||||||||||||||||||||||||||||||
| Transcript ID List | ENST00000544868.2,ENST00000619449.2,ENST00000617791.1,ENST00000534336.1,rmsk_3569609,ENST00000620902.1 | |||||||||||||||||||||||||||||||||||
| Transcript Detail |
|
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| Conserved Sites | na | |||||||||||||||||||||||||||||||||||
| snoRNA Num | 0 | snoRNA Guide Site | na | |||||||||||||||||||||||||||||||||
| snoRNA Guide Detail | na | |||||||||||||||||||||||||||||||||||
| writer Num | 3 | Writer Name List | FBL,NOP56,NOP58 | |||||||||||||||||||||||||||||||||
| Writer Catalysis Detail |
|
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| PubMed ID | 28504680 |
♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.
♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.
♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.
♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.
♥ Click the "Show Detail" button to show detailed list and click again to hide it.
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School of Life Science,
Sun Yat-sen University, China.
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