Details of RNA Modification Site of hg38
mod ID Nm_site_1885 mod Site chr15:55853478-55853479:-
mod Type Gm Sequence AGTTACTTCCATTACTCTCGGCCTTTTGGCTAAGATCAAGT
Motif Score noScore
RNA Structure Motif ..........(((.((((....)))).))).
 MFE -8.20
Support Dataset Num 1 Support sub-Dataset Num 1
Support Dataset List snoRNABase
Support sub-Dataset List snoRNABase
Cell/Tissue List na
Seq Type List na
Transcript ID List ENST00000338963.6,ENST00000503468.5,ENST00000508342.5,ENST00000506154.1,ENST00000435532.7,ENST00000648451.1,ENST00000508871.5,rmsk_4345169
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000338963.6ENSG00000069869.16NEDD4protein_codingintron-5
ENST00000503468.5ENSG00000069869.16NEDD4nonsense_mediated_decayintron-6
ENST00000508342.5ENSG00000069869.16NEDD4protein_codingintron-8
ENST00000506154.1ENSG00000069869.16NEDD4protein_codingintron-8
ENST00000435532.7ENSG00000069869.16NEDD4protein_codingintron-12
ENST00000648451.1ENSG00000069869.16NEDD4nonsense_mediated_decayintron-12
ENST00000508871.5ENSG00000069869.16NEDD4protein_codingintron-7
rmsk_4345169rmsk_4345169U2snRNAexon
Conserved Sites na
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 3 Writer Name List FBL,NOP56,NOP58
Writer Catalysis Detail

Writer Name Writer ID Writer Binding Site Source
FBLFBL:CH204768chr15:55853459-55853485SBDH120-104023
NOP56NOP56:CH171101chr15:55853458-55853485SBDH121-111002
NOP58NOP58:CH235500chr15:55853454-55853486SBDH124-171117
PubMed ID 16381836

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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