Details of RNA Modification Site of hg38
mod ID Nm_site_2494 mod Site chr17:45952025-45952026:+
mod Type Gm Sequence TGTCTGTGTATCGCTTCTCGGCCTTTTGGCTAAGATCAAGT
Motif Score noScore
RNA Structure Motif ..........(((.((((....)))).))).
 MFE -8.20
Support Dataset Num 2 Support sub-Dataset Num 2
Support Dataset List GSE104947, snoRNABase
Support sub-Dataset List GSE104947, snoRNABase
Cell/Tissue List NA
Seq Type List RiboMeth-seq
Transcript ID List ENST00000340799.9,ENST00000446361.7,ENST00000344290.9,ENST00000262410.9,rmsk_4703630,ENST00000571311.5,ENST00000535772.5,ENST00000570299.5,ENST00000334239.12,ENST00000351559.9
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000340799.9ENSG00000186868.15MAPTprotein_codingintron-1
ENST00000446361.7ENSG00000186868.15MAPTprotein_codingintron-1
ENST00000344290.9ENSG00000186868.15MAPTprotein_codingintron-1
ENST00000262410.9ENSG00000186868.15MAPTprotein_codingintron-1
rmsk_4703630rmsk_4703630U2snRNAexon
ENST00000571311.5ENSG00000186868.15MAPTnonsense_mediated_decayintron-1
ENST00000535772.5ENSG00000186868.15MAPTprotein_codingintron-1
ENST00000570299.5ENSG00000186868.15MAPTprocessed_transcriptintron-1
ENST00000334239.12ENSG00000186868.15MAPTprotein_codingintron-1
ENST00000351559.9ENSG00000186868.15MAPTprotein_codingintron-1
Conserved Sites na
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 3 Writer Name List FBL,NOP56,NOP58
Writer Catalysis Detail

Writer Name Writer ID Writer Binding Site Source
FBLFBL:CH273269chr17:45952018-45952055SBDH120-134571
NOP56NOP56:CH217655chr17:45952018-45952054SBDH124-217679
NOP58NOP58:CH299162chr17:45952018-45952054SBDH122-207735
PubMed ID 29048444, 16381836

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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