Details of RNA Modification Site of hg38
mod ID Nm_site_285 mod Site chr1:119744151-119744152:+
mod Type Um Sequence TGAACGCGGGCCTCTGACACTGCTTACACTGCACTCTGACC
Motif Score noScore
RNA Structure Motif ((((..........)))).............
 MFE -4.10
Support Dataset Num 1 Support sub-Dataset Num 1
Support Dataset List GSE90164
Support sub-Dataset List GSE90164
Cell/Tissue List HEK293
Seq Type List Nm-seq
Transcript ID List ENST00000641375.1,ENST00000641213.1,ENST00000641891.1,ENST00000641074.1,ENST00000641756.1,ENST00000641023.1,ENST00000641597.1,ENST00000369409.9,ENST00000641927.1,ENST00000641811.1,ENST00000369407.3,ENST00000482968.1,ENST00000642021.1,ENST00000641115.1
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000641375.1ENSG00000092621.12PHGDHnonsense_mediated_decayutr3-14
ENST00000641213.1ENSG00000092621.12PHGDHnonsense_mediated_decayutr3-13
ENST00000641891.1ENSG00000092621.12PHGDHnonsense_mediated_decayutr3-14
ENST00000641074.1ENSG00000092621.12PHGDHprotein_codingutr3-11
ENST00000641756.1ENSG00000092621.12PHGDHnonsense_mediated_decayutr3-15
ENST00000641023.1ENSG00000092621.12PHGDHprotein_codingutr3-12
ENST00000641597.1ENSG00000092621.12PHGDHprotein_codingutr3-15
ENST00000369409.9ENSG00000092621.12PHGDHprotein_codingutr3-12
ENST00000641927.1ENSG00000092621.12PHGDHprocessed_transcriptexon-12
ENST00000641811.1ENSG00000092621.12PHGDHprotein_codingutr3-8
ENST00000369407.3ENSG00000092621.12PHGDHretained_intronexon-11
ENST00000482968.1ENSG00000092621.12PHGDHretained_intronexon-4
ENST00000642021.1ENSG00000092621.12PHGDHretained_intronexon-11
ENST00000641115.1ENSG00000092621.12PHGDHprotein_codingutr3-10
Conserved Sites na
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 1 Writer Name List FBL
Writer Catalysis Detail

Writer Name Writer ID Writer Binding Site Source
FBLFBL:CH38649chr1:119744098-119744169SBDH121-21953
PubMed ID 28504680

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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