Details of RNA Modification Site of hg38
mod ID Nm_site_383 mod Site chr1:155358765-155358766:-
mod Type Am Sequence GGAATGATACAGAGAAGATTAGCATGGCCCCTGTGCAAGGA
Motif Score noScore
RNA Structure Motif ................((((((...))))))
 MFE -3.50
Support Dataset Num 4 Support sub-Dataset Num 4
Support Dataset List
Support sub-Dataset List

GSE104947, GSE77024, snOPY, snoRNABase
Cell/Tissue List NA, HEK293
Seq Type List RiboMeth-seq
Transcript ID List rmsk_272786,ENST00000368346.7,ENST00000392403.8,ENST00000384405.1
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
rmsk_272786rmsk_272786U6snRNAexon
ENST00000368346.7ENSG00000116539.13ASH1Lprotein_codingintron-13
ENST00000392403.8ENSG00000116539.13ASH1Lprotein_codingintron-13
ENST00000384405.1ENSG00000207134.1RNU6-106PsnRNAexon-1
Conserved Sites na
snoRNA Num 2 snoRNA Guide Site U6:53
snoRNA Guide Detail

snoRNA Guide Site snoRNA Guide Base snoRNA Name Box Source Database
U6:53ASNORD8C/DsnOPY
U6:53ASNORD9C/DsnOPY
U6:53ASNORD8C/DsnoRNABase
U6:53ASNORD9C/DsnoRNABase
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

♥ Click the "Show Detail" button to show detailed list and click again to hide it.

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