Details of RNA Modification Site of hg38
mod ID Nm_site_433 mod Site chr1:173866024-173866025:-
mod Type Gm Sequence AAAGTTTGTAAATGCAGCCTGGATGATGATAAGCAAATGCT
Motif Score noScore
RNA Structure Motif ...........((.((........)).))..
 MFE -0.20
Support Dataset Num 1 Support sub-Dataset Num 1
Support Dataset List GSE77024
Support sub-Dataset List GSE77024
Cell/Tissue List HEK293
Seq Type List RiboMeth-seq
Transcript ID List ENST00000436285.5,ENST00000450589.5,ENST00000454068.5,ENST00000443799.5,ENST00000651080.1,ENST00000421068.5,ENST00000456812.6,ENST00000432536.5,ENST00000451607.5,ENST00000416952.5,ENST00000449589.5,ENST00000422008.5,ENST00000422183.5,ENST00000431268.5,ENST00000449289.5,ENST00000442067.5,ENST00000456293.5,ENST00000414075.5,ENST00000425771.5,ENST00000412059.5,ENST00000430245.5,ENST00000650796.1,ENST00000436656.5,ENST00000448718.5,ENST00000455838.5,ENST00000452197.5
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000436285.5ENSG00000234741.8GAS5retained_intronintron-4
ENST00000450589.5ENSG00000234741.8GAS5lincRNAintron-5
ENST00000454068.5ENSG00000234741.8GAS5lincRNAintron-5
ENST00000443799.5ENSG00000234741.8GAS5retained_intronexon-4
ENST00000651080.1ENSG00000234741.8GAS5processed_transcriptintron-4
ENST00000421068.5ENSG00000234741.8GAS5retained_intronexon-3
ENST00000456812.6ENSG00000234741.8GAS5retained_intronintron-4
ENST00000432536.5ENSG00000234741.8GAS5lincRNAintron-4
ENST00000451607.5ENSG00000234741.8GAS5lincRNAintron-5
ENST00000416952.5ENSG00000234741.8GAS5retained_intronintron-4
ENST00000449589.5ENSG00000234741.8GAS5retained_intronintron-4
ENST00000422008.5ENSG00000234741.8GAS5retained_intronintron-4
ENST00000422183.5ENSG00000234741.8GAS5retained_intronintron-4
ENST00000431268.5ENSG00000234741.8GAS5retained_intronintron-4
ENST00000449289.5ENSG00000234741.8GAS5lincRNAintron-5
ENST00000442067.5ENSG00000234741.8GAS5retained_intronintron-4
ENST00000456293.5ENSG00000234741.8GAS5retained_intronexon-5
ENST00000414075.5ENSG00000234741.8GAS5lincRNAintron-1
ENST00000425771.5ENSG00000234741.8GAS5lincRNAintron-4
ENST00000412059.5ENSG00000234741.8GAS5retained_intronintron-5
ENST00000430245.5ENSG00000234741.8GAS5lincRNAintron-6
ENST00000650796.1ENSG00000234741.8GAS5retained_intronexon-2
ENST00000436656.5ENSG00000234741.8GAS5retained_intronintron-5
ENST00000448718.5ENSG00000234741.8GAS5lincRNAintron-4
ENST00000455838.5ENSG00000234741.8GAS5retained_intronintron-5
ENST00000452197.5ENSG00000234741.8GAS5lincRNAintron-4
Conserved Sites na
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 3 Writer Name List FBL,NOP56,NOP58
Writer Catalysis Detail

Writer Name Writer ID Writer Binding Site Source
FBLFBL:CH47394chr1:173865878-173866033SBDH121-26783
NOP56NOP56:CH38050chr1:173865963-173866037SBDH120-23343
NOP58NOP58:CH51632chr1:173865925-173866037SBDH124-38102
PubMed ID 28031372

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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