Details of RNA Modification Site of hg38
mod ID Nm_site_5251 mod Site chr4:107003635-107003636:-
mod Type Gm Sequence TGTATATGCTTGGCTGAGGAGCCAATGGGGCACAACTACCA
Motif Score noScore
RNA Structure Motif .(((((((((....)))))....))))....
 MFE -9.90
Support Dataset Num 1 Support sub-Dataset Num 1
Support Dataset List GSE96999
Support sub-Dataset List GSE96999
Cell/Tissue List PA1
Seq Type List RibOxi-seq
Transcript ID List ENST00000510534.1,ENST00000285311.8,rmsk_1401695,ENST00000513208.5,ENST00000510463.1
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000510534.1ENSG00000155011.9DKK2retained_intronintron-1
ENST00000285311.8ENSG00000155011.9DKK2protein_codingintron-1
rmsk_1401695rmsk_1401695LSU-rRNA_HsarRNAexon
ENST00000513208.5ENSG00000155011.9DKK2protein_codingintron-2
ENST00000510463.1ENSG00000155011.9DKK2protein_codingintron-3
Conserved Sites na
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 1 Writer Name List NOP58
Writer Catalysis Detail

Writer Name Writer ID Writer Binding Site Source
NOP58NOP58:CH526121chr4:107003624-107003654SBDH123-219129
PubMed ID 28495677

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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