| mod ID | Nm_site_5264 | mod Site | chr4:109992385-109992386:+ | ||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| mod Type | Cm | Sequence |
CAGAGAAGATTAGCATGGCCCCTGCGCAAGGAGGACATGCA |
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| Motif Score | noScore | ||||||||||||||||||||||||||||||||||||||||
| RNA Structure Motif |
.............(((((.....))).)).. |
MFE | -5.30 | ||||||||||||||||||||||||||||||||||||||
| Support Dataset Num | 4 | Support sub-Dataset Num | 4 | ||||||||||||||||||||||||||||||||||||||
| Support Dataset List | |||||||||||||||||||||||||||||||||||||||||
| Support sub-Dataset List |
GSE104947, GSE77024, snOPY, snoRNABase |
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| Cell/Tissue List | NA, HEK293 | ||||||||||||||||||||||||||||||||||||||||
| Seq Type List | RiboMeth-seq | ||||||||||||||||||||||||||||||||||||||||
| Transcript ID List | rmsk_1406810,ENST00000509996.1,ENST00000652245.1,ENST00000384530.1,ENST00000265171.9,ENST00000503392.1,ENST00000509793.5 | ||||||||||||||||||||||||||||||||||||||||
| Transcript Detail |
|
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| Conserved Sites | na | ||||||||||||||||||||||||||||||||||||||||
| snoRNA Num | 1 | snoRNA Guide Site | U6:62 | ||||||||||||||||||||||||||||||||||||||
| snoRNA Guide Detail |
|
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| writer Num | 3 | Writer Name List | FBL,NOP56,NOP58 | ||||||||||||||||||||||||||||||||||||||
| Writer Catalysis Detail |
|
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| PubMed ID |
♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.
♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.
♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.
♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.
♥ Click the "Show Detail" button to show detailed list and click again to hide it.
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School of Life Science,
Sun Yat-sen University, China.
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