Details of RNA Modification Site of hg38
mod ID Nm_site_5474 mod Site chr5:111722519-111722520:-
mod Type Am Sequence CTCATAGAAAGAGAATTCTAATCGCTTCTCGGCCTTTTGGC
Motif Score noScore
RNA Structure Motif .....(((((..........)))))......
 MFE -3.00
Support Dataset Num 2 Support sub-Dataset Num 2
Support Dataset List GSE104947, Modomics
Support sub-Dataset List GSE104947, Modomics
Cell/Tissue List NA
Seq Type List RiboMeth-seq
Transcript ID List ENST00000514515.5,ENST00000509025.5,rmsk_1715282
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000514515.5ENSG00000134986.13NREPnonsense_mediated_decayintron-3
ENST00000509025.5ENSG00000134986.13NREPprotein_codingintron-3
rmsk_1715282rmsk_1715282U2snRNAexon
Conserved Sites na
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID 29048444, 29106616

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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