Details of RNA Modification Site of hg38
mod ID Nm_site_5554 mod Site chr5:143280019-143280020:-
mod Type Am Sequence TGAGGCTCTGACCCAGTGAGATTACAGAGGAAGTTATCCTC
Motif Score noScore
RNA Structure Motif (((((..............))))).......
 MFE -4.20
Support Dataset Num 1 Support sub-Dataset Num 1
Support Dataset List GSE90164
Support sub-Dataset List GSE90164
Cell/Tissue List HeLa
Seq Type List Nm-seq
Transcript ID List ENST00000415690.6,ENST00000424646.6,ENST00000394464.7,ENST00000343796.6
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000415690.6ENSG00000113580.15NR3C1protein_codingintron-8
ENST00000424646.6ENSG00000113580.15NR3C1protein_codingutr3-9
ENST00000394464.7ENSG00000113580.15NR3C1protein_codingutr3-9
ENST00000343796.6ENSG00000113580.15NR3C1protein_codingutr3-9
Conserved Sites na
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID 28504680

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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