Details of RNA Modification Site of hg38
mod ID Nm_site_5569 mod Site chr5:151803918-151803919:+
mod Type Um Sequence AGGTGAGGTCCGTCTGAATGTCGAAGAGAAGAAGACTCGAG
Motif Score noScore
RNA Structure Motif ......((((.....((.....))...))))
 MFE -2.90
Support Dataset Num 1 Support sub-Dataset Num 1
Support Dataset List GSE90164
Support sub-Dataset List GSE90164
Cell/Tissue List HeLa
Seq Type List Nm-seq
Transcript ID List ENST00000522761.5,ENST00000356245.8,ENST00000520177.5,ENST00000394123.7
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000522761.5ENSG00000145907.15G3BP1nonsense_mediated_decayutr3-12
ENST00000356245.8ENSG00000145907.15G3BP1protein_codingcds-12
ENST00000520177.5ENSG00000145907.15G3BP1nonsense_mediated_decayutr3-11
ENST00000394123.7ENSG00000145907.15G3BP1protein_codingcds-12
Conserved Sites na
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 2 Writer Name List FBL,NOP58
Writer Catalysis Detail

Writer Name Writer ID Writer Binding Site Source
FBLFBL:CH527020chr5:151803905-151803943SBDH121-295636
NOP58NOP58:CH573965chr5:151803898-151803951SBDH120-258520
PubMed ID 28504680

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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