| mod ID | Nm_site_6009 | mod Site | chr6:154190348-154190349:+ | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| mod Type | Gm | Sequence |
TACAAAAATTAATAAATTCTGAGCAGCCATCTTATGTTAAA |
||||||||||||||||||
| Motif Score | noScore | ||||||||||||||||||||
| RNA Structure Motif |
............................... |
MFE | 0.00 | ||||||||||||||||||
| Support Dataset Num | 1 | Support sub-Dataset Num | 1 | ||||||||||||||||||
| Support Dataset List | GSE77024 | ||||||||||||||||||||
| Support sub-Dataset List | GSE77024 | ||||||||||||||||||||
| Cell/Tissue List | HEK293 | ||||||||||||||||||||
| Seq Type List | RiboMeth-seq | ||||||||||||||||||||
| Transcript ID List | ENST00000337049.8,rmsk_2114682,ENST00000524150.2 | ||||||||||||||||||||
| Transcript Detail |
|
||||||||||||||||||||
| Conserved Sites | na | ||||||||||||||||||||
| snoRNA Num | 0 | snoRNA Guide Site | na | ||||||||||||||||||
| snoRNA Guide Detail | na | ||||||||||||||||||||
| writer Num | 3 | Writer Name List | FBL,NOP56,NOP58 | ||||||||||||||||||
| Writer Catalysis Detail |
|
||||||||||||||||||||
| PubMed ID | 28031372 |
♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.
♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.
♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.
♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.
♥ Click the "Show Detail" button to show detailed list and click again to hide it.
© 2023, Qu Lab.
School of Life Science,
Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1