Details of RNA Modification Site of hg38
mod ID Nm_site_6183 mod Site chr7:92701744-92701745:-
mod Type Am Sequence ATTAGCATGGCCCCTGCGCAAGGATGACACGCAAATTCGTG
Motif Score noScore
RNA Structure Motif .........((((...........))))...
 MFE -2.90
Support Dataset Num 2 Support sub-Dataset Num 2
Support Dataset List GSE104947, snoRNABase
Support sub-Dataset List GSE104947, snoRNABase
Cell/Tissue List NA
Seq Type List RiboMeth-seq
Transcript ID List rmsk_2304645,ENST00000473078.1,ENST00000265734.8,ENST00000384036.1,ENST00000424848.2
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
rmsk_2304645rmsk_2304645U6snRNAexon
ENST00000473078.1ENSG00000105810.9CDK6retained_intronintron-1
ENST00000265734.8ENSG00000105810.9CDK6protein_codingintron-4
ENST00000384036.1ENSG00000206763.1RNU6-10PsnRNAexon-1
ENST00000424848.2ENSG00000105810.9CDK6protein_codingintron-4
Conserved Sites na
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID 29048444, 16381836

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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