| mod ID | Nm_site_6189 | mod Site | chr7:92701761-92701762:- | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| mod Type | Am | Sequence |
AGAACGATACAGAGAAGATTAGCATGGCCCCTGCGCAAGGA |
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| Motif Score | noScore | ||||||||||||||||||||||||||||||
| RNA Structure Motif |
................(((.......))).. |
MFE | -1.20 | ||||||||||||||||||||||||||||
| Support Dataset Num | 4 | Support sub-Dataset Num | 4 | ||||||||||||||||||||||||||||
| Support Dataset List | |||||||||||||||||||||||||||||||
| Support sub-Dataset List |
GSE104947, GSE77024, snoRNABase, snOPY |
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| Cell/Tissue List | NA, HEK293 | ||||||||||||||||||||||||||||||
| Seq Type List | RiboMeth-seq | ||||||||||||||||||||||||||||||
| Transcript ID List | ENST00000424848.2,ENST00000473078.1,ENST00000384036.1,ENST00000265734.8,rmsk_2304645 | ||||||||||||||||||||||||||||||
| Transcript Detail |
|
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| Conserved Sites | na | ||||||||||||||||||||||||||||||
| snoRNA Num | 2 | snoRNA Guide Site | U6:53 | ||||||||||||||||||||||||||||
| snoRNA Guide Detail |
|
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| writer Num | 0 | Writer Name List | na | ||||||||||||||||||||||||||||
| Writer Catalysis Detail | na | ||||||||||||||||||||||||||||||
| PubMed ID |
♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.
♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.
♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.
♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.
♥ Click the "Show Detail" button to show detailed list and click again to hide it.
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School of Life Science,
Sun Yat-sen University, China.
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