Details of RNA Modification Site of hg38
mod ID Nm_site_6335 mod Site chr8:47970871-47970872:+
mod Type Cm Sequence ACAGCAGACTCTGTCCATTGCAAAGGTGAGTCGCCTTCTCC
Motif Score noScore
RNA Structure Motif .(((((...((........)).)))))....
 MFE -7.50
Support Dataset Num 1 Support sub-Dataset Num 1
Support Dataset List GSE90164
Support sub-Dataset List GSE90164
Cell/Tissue List HeLa
Seq Type List Nm-seq
Transcript ID List ENST00000648554.1,ENST00000262105.6,ENST00000523944.5,ENST00000650216.1,ENST00000648519.1,ENST00000519470.1,ENST00000517709.1,ENST00000649838.1,ENST00000649919.1,ENST00000647877.1,ENST00000520637.2,ENST00000650327.1,ENST00000649973.1,ENST00000648407.1
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000648554.1ENSG00000104738.17MCM4nonsense_mediated_decaycds-2
ENST00000262105.6ENSG00000104738.17MCM4protein_codingcds-11
ENST00000523944.5ENSG00000104738.17MCM4protein_codingcds-12
ENST00000650216.1ENSG00000104738.17MCM4protein_codingcds-9
ENST00000648519.1ENSG00000104738.17MCM4nonsense_mediated_decayutr3-12
ENST00000519470.1ENSG00000104738.17MCM4retained_intronexon-1
ENST00000517709.1ENSG00000104738.17MCM4retained_intronexon-2
ENST00000649838.1ENSG00000104738.17MCM4protein_codingcds-13
ENST00000649919.1ENSG00000104738.17MCM4protein_codingcds-11
ENST00000647877.1ENSG00000104738.17MCM4nonsense_mediated_decayintron-4
ENST00000520637.2ENSG00000104738.17MCM4protein_codingcds-5
ENST00000650327.1ENSG00000104738.17MCM4processed_transcriptintron-1
ENST00000649973.1ENSG00000104738.17MCM4protein_codingcds-12
ENST00000648407.1ENSG00000104738.17MCM4protein_codingcds-12
Conserved Sites na
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 1 Writer Name List NOP58
Writer Catalysis Detail

Writer Name Writer ID Writer Binding Site Source
NOP58NOP58:CH671783chr8:47970864-47970902SBDH123-279535
PubMed ID 28504680

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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