Details of RNA Modification Site of hg38
mod ID Nm_site_879 mod Site chr11:12787925-12787926:+
mod Type Um Sequence TCTAGATATCTTTGAAATGATACTCTGGTTTCTCTTCAGAC
Motif Score noScore
RNA Structure Motif ........(((((.(.....).)))))....
 MFE -2.10
Support Dataset Num 2 Support sub-Dataset Num 2
Support Dataset List GSE104947, Modomics
Support sub-Dataset List GSE104947, Modomics
Cell/Tissue List NA
Seq Type List RiboMeth-seq
Transcript ID List rmsk_3479157,ENST00000527575.5,ENST00000527636.6,ENST00000638666.1,ENST00000334310.10
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
rmsk_3479157rmsk_3479157U5snRNAexon
ENST00000527575.5ENSG00000187079.17TEAD1protein_codingintron-2
ENST00000527636.6ENSG00000187079.17TEAD1protein_codingintron-3
ENST00000638666.1ENSG00000187079.17TEAD1protein_codingintron-1
ENST00000334310.10ENSG00000187079.17TEAD1protein_codingintron-2
Conserved Sites na
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID 29048444, 29106616

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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