Details of RNA Modification Site of hg38
mod ID Pseudo_site_1024 mod Site chr11:119055265-119055266:-
mod Type Y Sequence GCAGGCAGATAACCCCCATGTAGCTCTTTACCAGGCCCGCT
Motif Score noScore
RNA Structure Motif ..........((..((((....))))..)).
 MFE -1.40
Support Dataset Num 2 Support sub-Dataset Num 2
Support Dataset List GSE63655, GSE179798
Support sub-Dataset List GSE63655, GSE179798
Cell/Tissue List HEK293T, HeLa
Seq Type List BID-seq
Transcript ID List ENST00000614668.4,ENST00000621959.4,ENST00000530473.5,ENST00000614711.4,ENST00000534233.5,ENST00000533381.5,ENST00000531694.5,ENST00000652093.1,ENST00000617285.5,ENST00000543287.5,ENST00000531968.5,ENST00000527038.6,ENST00000532519.6,ENST00000529174.1,ENST00000612687.4,ENST00000622474.4,ENST00000532421.5,ENST00000526656.5
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000614668.4ENSG00000149428.19HYOU1protein_codingcds-5
ENST00000621959.4ENSG00000149428.19HYOU1protein_codingcds-6
ENST00000530473.5ENSG00000149428.19HYOU1protein_codingcds-5
ENST00000614711.4ENSG00000149428.19HYOU1protein_codingcds-5
ENST00000534233.5ENSG00000149428.19HYOU1protein_codingcds-5
ENST00000533381.5ENSG00000149428.19HYOU1retained_intronexon-5
ENST00000531694.5ENSG00000149428.19HYOU1retained_intronexon-1
ENST00000652093.1ENSG00000149428.19HYOU1protein_codingcds-5
ENST00000617285.5ENSG00000149428.19HYOU1protein_codingcds-5
ENST00000543287.5ENSG00000149428.19HYOU1nonsense_mediated_decayutr3-4
ENST00000531968.5ENSG00000149428.19HYOU1nonsense_mediated_decayutr3-4
ENST00000527038.6ENSG00000149428.19HYOU1protein_codingcds-5
ENST00000532519.6ENSG00000149428.19HYOU1protein_codingcds-5
ENST00000529174.1ENSG00000149428.19HYOU1retained_intronexon-3
ENST00000612687.4ENSG00000149428.19HYOU1protein_codingcds-5
ENST00000622474.4ENSG00000149428.19HYOU1retained_intronexon-5
ENST00000532421.5ENSG00000149428.19HYOU1protein_codingcds-5
ENST00000526656.5ENSG00000149428.19HYOU1protein_codingcds-5
Conserved Sites na
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID 26075521, 36302989

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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