Details of RNA Modification Site of hg38
mod ID Pseudo_site_2812 mod Site chr2:223991897-223991898:-
mod Type Y Sequence GGGTCTGTGGAAATCACGGTTCCAACCCGAGAACACAAAGA
Motif Score noScore
RNA Structure Motif ((((.....))))((((........))))..
 MFE -4.20
Support Dataset Num 4 Support sub-Dataset Num 4
Support Dataset List
Support sub-Dataset List

GSE60047, GSE63655, GSE179798, GSE212210
Cell/Tissue List A549, HEK293T, HeLa
Seq Type List BID-seq,PRAISE
Transcript ID List ENST00000258405.9,ENST00000447280.6,ENST00000432738.5,ENST00000409840.7,ENST00000409304.5
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000258405.9ENSG00000135919.13SERPINE2protein_codingcds-4
ENST00000447280.6ENSG00000135919.13SERPINE2protein_codingcds-4
ENST00000432738.5ENSG00000135919.13SERPINE2protein_codingcds-5
ENST00000409840.7ENSG00000135919.13SERPINE2protein_codingcds-5
ENST00000409304.5ENSG00000135919.13SERPINE2protein_codingcds-4
Conserved Sites na
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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