Details of RNA Modification Site of hg38
mod ID Pseudo_site_4235 mod Site chr6:34246158-34246159:+
mod Type Y Sequence GGGGAGGGGTAGCCATGATTTGTCCCAGCCTGGGGCTCCCT
Motif Score noScore
RNA Structure Motif ((.....)).......((((((...))))))
 MFE -8.30
Support Dataset Num 2 Support sub-Dataset Num 2
Support Dataset List GSE63655, GSE212210
Support sub-Dataset List GSE63655, GSE212210
Cell/Tissue List HEK293T
Seq Type List PRAISE
Transcript ID List ENST00000311487.9,ENST00000347617.10,ENST00000374116.3,ENST00000447654.5,ENST00000401473.7
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000311487.9ENSG00000137309.19HMGA1protein_codingutr3-6
ENST00000347617.10ENSG00000137309.19HMGA1protein_codingutr3-5
ENST00000374116.3ENSG00000137309.19HMGA1protein_codingutr3-5
ENST00000447654.5ENSG00000137309.19HMGA1protein_codingutr3-5
ENST00000401473.7ENSG00000137309.19HMGA1protein_codingutr3-6
Conserved Sites na
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID 26075521, 36997645

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

♥ Click the "Show Detail" button to show detailed list and click again to hide it.

© 2023, Qu Lab. School of Life Science, Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1