| mod ID | Pseudo_site_4666 | mod Site | chr8:127999135-127999136:+ | ||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| mod Type | Y | Sequence |
TTTTAACACATATGAATACTTACCTGGCAGGGGAGATACCA |
||||||||||||||||||||||||||||||||||||||
| Motif Score | noScore | ||||||||||||||||||||||||||||||||||||||||
| RNA Structure Motif |
.............((..(((...)))..)). |
MFE | -3.00 | ||||||||||||||||||||||||||||||||||||||
| Support Dataset Num | 3 | Support sub-Dataset Num | 3 | ||||||||||||||||||||||||||||||||||||||
| Support Dataset List | Modomics, snoRNABase, snOPY | ||||||||||||||||||||||||||||||||||||||||
| Support sub-Dataset List | Modomics, snoRNABase, snOPY | ||||||||||||||||||||||||||||||||||||||||
| Cell/Tissue List | na | ||||||||||||||||||||||||||||||||||||||||
| Seq Type List | na | ||||||||||||||||||||||||||||||||||||||||
| Transcript ID List | rmsk_2647565,ENST00000513868.6,ENST00000522875.5,ENST00000512617.6,ENST00000384382.1,ENST00000521600.5,ENST00000651587.1 | ||||||||||||||||||||||||||||||||||||||||
| Transcript Detail |
|
||||||||||||||||||||||||||||||||||||||||
| Conserved Sites | na | ||||||||||||||||||||||||||||||||||||||||
| snoRNA Num | 1 | snoRNA Guide Site | U1:6 | ||||||||||||||||||||||||||||||||||||||
| snoRNA Guide Detail |
|
||||||||||||||||||||||||||||||||||||||||
| writer Num | 0 | Writer Name List | na | ||||||||||||||||||||||||||||||||||||||
| Writer Catalysis Detail | na | ||||||||||||||||||||||||||||||||||||||||
| PubMed ID | 29106616, 16381836, 24148649 |
♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.
♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.
♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.
♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.
♥ Click the "Show Detail" button to show detailed list and click again to hide it.
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School of Life Science,
Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1