Contact us
tRF2Cancer web server is under constant maintenance and improvement. Any questions about the usage, comments or suggestions are appreciated.
Please contact us: zhengll33@mail.sysu.edu.cn or
yangjh7@mail.sysu.edu.cn.
Lingling Zheng or Jian-Hua Yang
RNA Information Center, State Key Laboratory for Biocontrol, Sun Yat-sen University, Guangzhou 510275, P. R. China
Our tools
We have developed several databases and software for ncRNA research.
starBase v2.0
A database for exploring miRNA-mRNA and miRNA-ncRNA interaction maps from Argonaute and other RBP CLIP-Seq data. (Li et al. Nucleic Acids Res. 2014;42:D92-7)
ChIPBase
A database for decoding the transcriptional regulation of lncRNA and miRNA genes from ChIP-Seq data. (Yang et al. Nucleic Acids Res. 2013;41:D177-87)
deepBase v2.0
Deeply Exploit Small RNAs, Long non-coding RNAs and Circular RNAs from Deep Sequencing Data. (Zheng et al. Nucleic Acids Res. 2015 Nov 20. pii: gkv1273.)
RMBase
A resource for decoding the landscape of RNA modifications from high-throughput sequencing data (Sun et al. Nucleic Acids Res. 2015; doi: 10.1093/nar/gkv1036.)
StarScan
A web server for scanning small RNA targets from degradome sequencing data. (Liu et al. Nucleic Acids Res. 2015 May 18)
snoSeeker
An advanced computational package for screening of guide and orphan snoRNA genes in the human genome. (Yang et al. Nucleic Acids Res. 2006;34:5112-5123)
ACTLocater
Deciphering the transcriptional regulation of microRNA genes in humans. (Xiao et al. Nucleic Acids Res. 2013 Jan; 41(1): e5.)