Deciphering the Map of RNA Modifications from Epitranscriptome Sequencing Data. (Xuan et al. Nucleic Acids Res. 2018 Jan 4;46(D1):D327-34.)
A database for exploring miRNA-mRNA and miRNA-ncRNA interaction maps from Argonaute and other RBP CLIP-Seq data. (Li et al. Nucleic Acids Res. 2014;42:D92-7.)
Decoding transcriptional regulatory networks of non-coding RNAs and protein-coding genes from ChIP-seq data. (Zhou et al. Nucleic Acids Res. 2017 Jan 04;45(D1):D43-D50.)
DNA modification, RNA regulation and protein binding of expressed pseudogenes in human health and disease. (Zheng et al. Nucleic Acids Res. 2018 Jan 4;46(D1):D85-D91.)
expression atlas and interactive analysis of ncRNAs from thousands of deep-sequencing data. (Xie et al. Nucleic Acids Res.2020 Nov 11;gkaa1039.)
A database of expression, classification and functions of lncRNAs in single cells. (Zheng et al. Briefings in bioinformatics. 2020 Dec 14;bbaa325.)