dreamBase: DNA modification, RNA regulation and protein binding of expressed pseudogenes in human health and disease. (Zheng et al. Nucleic Acids Res. 2018 Jan 4;46(D1):D85-D91.)

Decoding transcriptional regulatory networks of non-coding RNAs and protein-coding genes from ChIP-seq data. (Zhou et al. Nucleic Acids Res. 2017;45(D1):D43-D50)

tRF2Cancer: A web server to detect tRNA-derived small RNA fragments (tRFs) and their expression in multiple cancers. (Zheng et al. Nucleic Acids Res. 2016 Jul 8;44(W1):W185-93.)

deepBase v2.0: identification, expression, evolution and function of small RNAs, LncRNAs and circular RNAs from deep-sequencing data.(Zheng et al. Nucleic Acids Res. 2015 Nov 20. pii: gkv1273.)

A resource for decoding the landscape of RNA modifications from high-throughput sequencing data (Sun et al. Nucleic Acids Res. 2015; doi: 10.1093/nar/gkv1036.)

A database for exploring miRNA-mRNA and miRNA-ncRNA interaction maps from Argonaute and other RBP CLIP-Seq data. (Li et al. Nucleic Acids Res. 2014;42:D92-7)