1. Select clade, organism, assembly and factor type:
2. Select regulatory domains and combination mode:
3. Select multiple sets of experiments:
| Sample Id | Factor | Refseq | Cell line | Treatment | Source | Accession | Reference | Pubmed | Software | |
|---|---|---|---|---|---|---|---|---|---|---|
| Sample Id | Factor | Refseq | Cell line | Treatment | Source | Accession | Reference | Pubmed | Software |
4. Check and start the query:
Download center provides users with an interface to download genes which are transcriptionally regulated or affected by one or multiple factors in a set of experiment conditions.
How to use:
1) Select factor type: Pull down the "Factor type" menu to restrict the analysis on "transcription factor".
2) Select regulatory domain: Pull down the selective menus to restrict the analysis on the selected regulatory domain.
3) Select motif status: The motif status declares whether there are any binding motifs of the selected factor within the selected regualtory domain. The "All", "Y" and "N" link to "Analyze with all", "Analyze with motifs" and "Analyze without motifs", respectively. All the binding motifs data are identified by ChIPBase.
4) Select combination mode: ChIPBase supports two combination modes to process the data. The "union" will combine all the regulated or affected genes together in a set of conditions, while "intersection" will retrive the common ones.
5) Select experiments: You can filter the selective tables above to get your interested experiment conditions, like multiple factors, cell lines (tissues) or conditions (the maximum is 15).
6) Check or download results: Click "Check" to check your selected experiments. Click "Submit" to download the analyzed results.