Co-Expression ChIPBase v2.0: Decoding Transcriptional Regulactory Networks of Non-coding RNAs and Protein-coding Genes from ChIP-seq Data
ChIPBase v2.0 Home
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Welcome to ChIPBase!

News: ChIPBase v2.0 has been updated to v3.0 !
Jumping to ChIPBase v3.0 page to see more function and modules.

How to cite:

ChIPBase v2.0: decoding transcriptional regulatory networks of non-coding RNAs and protein-coding genes from ChIP-seq data. Zhou KR, Liu S, Sun WJ, Zheng LL, Zhou H, Yang JH*, Qu LH*. Nucleic Acids Res. 2017 Jan 04;45(D1):D43-D50.

ChIPBase: A database for decoding the transcriptional regulation of long non-coding RNA and microRNA genes from ChIP-Seq data. Yang JH, Li JH, Jiang S, Zhou H and Qu LH*. Nucleic Acids Res. 2013 Jan;41:D177-87.Epub 2012 Nov 17

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Release notes

Release version 2.2.0 (2016-07-21)
  Updated gene annotation sets of human and mouse.
Release version 2.1.0 (2016-06-01)
  Finished data import and website development.
  • ChIP-seq data: ~10,000
  • RNA-seq data: ~20,000

Sample Statistics in 2 Species

Human           Mouse