Browse binding motifs of DNA-binding protein identified from ChIP-Seq data
1. Select clade, organism, assembly and protein factor:
2. Select an experiment and browse it's binding motif:
| Browse | Sample Id | Cell line | Treatment | Refseq | Source | Accession | Reference | Pubmed | Software |
|---|---|---|---|---|---|---|---|---|---|
| Sample Id | Cell line | Treatment | Refseq | Source | Accession | Reference | Pubmed | Software |
About HOMER module
Motif provides users with a platform to visulize the binding motifs of transcription factors by de novo analyzing the ChIP-Seq data.
In ChIPBase, all the motifs data are display as PWMs, visualized motif logos and binding sites.
How to use:
1) Select factor: Pull down the "Protein factor" menu to get your interested factor.
2) Select experiment and browse: You can filter the selective tables above to get your interested experiment condition. Then click "Browse" to browse the related motifs.