Contact US
DeepBase v3.0 is under constant maintenance and improvement.
Any questions about the usage, comments or suggestions are appreciated.
Jian-Hua Yang: yangjh7@mail.sysu.edu.cn
RNA Information Center, State Key Laboratory for Biocontrol, Sun Yat-sen University, Guangzhou 510275, P. R. China
Fang-zhou Xie: xiefzh@mail2.sysu.edu.cn
RNA Information Center, State Key Laboratory for Biocontrol, Sun Yat-sen University, Guangzhou 510275, P. R. China
Our Tools
In addition to deepBase v3.0, we have also developed several databases and softwares to
investigate the biological functions and mechanisms of various RNA in biological processes.
RMBase V2.0
Deciphering the Map of RNA Modifications from Epitranscriptome Sequencing Data. (Xuan et al. Nucleic Acids Res. 2018 Jan 4;46(D1):D327-34.)
ENCORI
A database for exploring miRNA-mRNA and miRNA-ncRNA interaction maps from Argonaute and other RBP CLIP-Seq data. (Li et al. Nucleic Acids Res. 2014;42:D92-7.)
ChIPBase v2.0
Decoding transcriptional regulatory networks of non-coding RNAs and protein-coding genes from ChIP-seq data. (Zhou et al. Nucleic Acids Res. 2017 Jan 04;45(D1):D43-D50.)
dreamBase
DNA modification, RNA regulation and protein binding of expressed pseudogenes in human health and disease. (Zheng et al. Nucleic Acids Res. 2018 Jan 4;46(D1):D85-D91.)
deepBase v3.0
Identification, expression, evolution and function of small RNAs, LncRNAs and circular RNAs from deep-sequencing data. (Zheng et al. Nucleic Acids Res. 2016 Jan 4;44(D1):D196-202.)
tRF2Cancer
A web server to detect tRNA-derived small RNA fragments (tRFs) and their expression in multiple cancers. (Zheng et al. Nucleic Acids Res. 2016 Jul 8;44(W1):W185-93.)
StarScan
A web server for scanning small RNA targets from degradome sequencing data. (Liu et al. Nucleic Acids Res. 2015 May 18.)
snoSeeker
An advanced computational package for screening of guide and orphan snoRNA genes in the human genome. (Yang et al. Nucleic Acids Res. 2006;34:5112-5123.)