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Tissue lncRNA
Cancer lncRNA
lncRNA anno
Tissue smallRNAs
Cancer smallRNAs
Exosomes RNA
tRFs

   

Tissue LncRNA Expression Table:


Clade Species Download
mammalHomo sapiensDownload
mammalPan troglodytesDownload
mammalGorilla gorilla gorillaDownload
mammalMacaca mulattaDownload
mammalMus musculusDownload
mammalRattus norvegicusDownload
mammalBos taurusDownload
mammalMonodelphis domesticaDownload
mammalOrnithorhynchus anatinusDownload
vertebrateGallus gallusDownload
vertebrateXenopus tropicalisDownload
vertebrateDanio rerioDownload
insectDrosophila melanogasterDownload
nematodeCaenorhabditis elegansDownload
   

Cancer LncRNA Expression Table:


Source Cancer Download
TCGAACCDownload
TCGABLCADownload
TCGABRCADownload
TCGACESCDownload
TCGACHOLDownload
TCGACOADDownload
TCGADLBCDownload
TCGAESCADownload
TCGAGBMDownload
TCGAHNSCDownload
TCGAKICHDownload
TCGAKIRCDownload
TCGAKIRPDownload
TCGALAMLDownload
TCGALGGDownload
TCGALIHCDownload
TCGALUADDownload
TCGALUSCDownload
TCGAMESODownload
TCGAOVDownload
TCGAPAADDownload
TCGAPCPGDownload
TCGAPRADDownload
TCGAREADDownload
TCGASARCDownload
TCGASKCMDownload
TCGASTADDownload
TCGATGCTDownload
TCGATHCADownload
TCGATHYMDownload
TCGAUCECDownload
TCGAUCSDownload
TCGAUVMDownload
ICGCBOCA_FRDownload
ICGCCLLE_ESDownload
ICGCMALY_DEDownload
ICGCPACA_AUDownload
ICGCPRAD_CADownload
ICGCBPLL_FRDownload
ICGCLICA_FRDownload
ICGCORCA_INDownload
ICGCPACA_CADownload
ICGCPRAD_FRDownload
ICGCBRCA_KRDownload
ICGCLIRI_JPDownload
ICGCOV_AUDownload
ICGCPAEN_AUDownload
ICGCRECA_EUDownload
   

lncRNA Annotation(bed):


Clade Species Download
mammalHomo sapiensDownload
mammalPan troglodytesDownload
mammalGorilla gorilla gorillaDownload
mammalMacaca mulattaDownload
mammalMus musculusDownload
mammalRattus norvegicusDownload
mammalBos taurusDownload
mammalMonodelphis domesticaDownload
mammalOrnithorhynchus anatinusDownload
vertebrateGallus gallusDownload
vertebrateXenopus tropicalisDownload
vertebrateDanio rerioDownload
insectDrosophila melanogasterDownload
nematodeCaenorhabditis elegansDownload

   

Tissue Small RNA Download Table:


Clade Species Source ID Study Download
mammalMus musculusoocytesmallRNA-19to24GSE10364Small RNA profile in fully grown mammalian oocytesDownload
vertebrateGallus gallusCE7GSE10686Deep sequencing of small RNA libraries from chicken embryoDownload
insectDrosophila melanogasterWT testes (18-24nt)GSE11086Deep sequencing of Drosophila melanogaster small RNAsDownload
insectDrosophila melanogasterImaginal discGSE11624Drosophila melanogaster small RNA sequence from 14 librariesDownload
mammalMus musculusmEFsmallrna_rep1GSE11724Connecting microRNA genes to the core transcriptional regulatory circuitry of embryonic stem cellsDownload
mammalMus musculusAnalysis of small RNAs in murine neutrophils cultured in vitro by Solexa/Illumina genome analyzerGSE12075The impact of microRNAs on protein outputDownload
mammalMus musculusESC wild type (Illumina)GSE12521Endogenous shRNAs, siRNAs, and Other Microprocessor-independent, Dicer-dependent Small RNAs in Mouse ES CellsDownload
nematodeCaenorhabditis elegansyoung adult malesGSE13339Changes in expression of microRNAs during C. elegans developmentDownload
mammalHomo sapiensendogenous small RNA associated to human Argonaute 1GSE13370High-throughput pyrosequencing of endogenous small RNAs associated to human Argonaute 1 & 2Download
deuterostomeCiona intestinalisCiona EggGSE13625A distinct class of small RNAs arises from pre-miRNA-proximal regions in a simple chordateDownload
nematodeCaenorhabditis remaneitotal small RNAs from C. remaneiGSE15169Repertoire and evolution of miRNA genes in four divergent nematode speciesDownload
vertebrateGallus gallusHigh-throughput sequencing of small RNAs in chicken somite embryosGSE15513High-throughput sequencing of small RNAs in chicken somite embryosDownload
mammalHomo sapiensMCF7_smallRNAseqGSE16060The non-coding RNA of the multidrug resistance-linked vault particle encodes multiple regulatory small RNAsDownload
mammalHomo sapiensSequencing of small RNA from the H1 cell line; smRNA-seq_h1_r1GSE16256UCSD Human Reference Epigenome Mapping ProjectDownload
mammalHomo sapienssmRNA-Seq analysis of H1EScd1, HS1295-1_42ERCAAXXGSE16368UCSF-UBC Human Reference Epigenome Mapping ProjectDownload
mammalMus musculusNIH3T3GSE16579miRNA expression of human cancer and mouse cell linesDownload
mammalMus musculus18dpp_hetero_tdrd6-KOGSE17319Proteomic analysis of murine Piwi proteins reveals a role for arginine methylation in specifying interaction with Tudor family membersDownload
insectBombyx moriWhole body_primary resultsGSE17965MicroRNAs of Bombyx mori identified by Solexa sequencingDownload
mammalHomo sapiensIllumina: Human-superior frontal gyrus-34 days old rep1GSE18069Gene and miRNA expression data from primate postnatal brain in prefrontal cortex: time courseDownload
mammalHomo sapiensQF1160MBGSE18381Characterization of the melanoma miRNAome by deep sequencingDownload
mammalMus musculustotal RNAGSE19172Mili-IP, Miwi-IP, and total RNA from mouse adult testisDownload
mammalMus musculusshLuc.1309 (-dox)GSE19476A rapid and scalable system for studying gene function in mice using conditional RNA interferenceDownload
mammalHomo sapiensNormal PBMC Sample 1GSE19833Analysis of microRNA transcriptome by deep sequencing of small RNA libraries of peripheral bloodDownload
mammalMus musculusMitoPLD+/+ E16.5 small RNAGSE20327Analysis of small RNAs in piRNA pathway mutant mouse testesDownload
mammalMus musculustestes_rep1GSE20384Mammalian microRNAs: Experimental evaluation of novel and previously annotated genesDownload
mammalHomo sapiensG652TGSE20592Ultra-high throughput sequencing-based small RNA discovery and discrete statistical biomarker analysis in a collection of cervical tumors and matched controlsDownload
mammalHomo sapiensTHP1_nuc_sRNAsGSE20664Nuclear-localized tiny RNAs are associated with transcription initiation and splice sites in metazoansDownload
mammalMus musculusmouse_granulocyte_nuclei_smallRNAsGSE20683RNA profiling in mouse haemopoiesisDownload
mammalHomo sapiensfertile_donor1GSE21191Characterization of the small RNA population in Human spermatozoaDownload
mammalHomo sapiensHuman Normal Liver Tissue Sample 1GSE21279Small RNA Solexa sequencing of human liver samplesDownload
mammalMus musculusmouse testicular tissue [09-002]GSE21630Regulation of microRNA Expression and Abundance during LymphopoiesisDownload
mammalHomo sapiensWhole Brain small RNAs 1GSE22068Expanding the MicroRNA Targeting Code: A Novel Type of Site with Centered PairingDownload
mammalMus musculusMEF_controlGSE22760Small RNA profiling of RNase III enzyme deficient DN3 thymocytes, Tregs, activated CD4+ T cells, and embryonic fibroblastsDownload
mammalHomo sapiensMututated CLL (CLLM633)GSE22898Deep Sequencing of the Small RNA Transcriptome of Normal and Malignant Human B cells Identifies Hundreds of Novel MicroRNAsDownload
nematodeCaenorhabditis eleganssmall RNAs from C. elegans, wild-type, day 0 of adulthoodGSE24510Deep sequencing of small RNAs from C. elegans during agingDownload
mammalMus musculuspaternal control diet 3GSE25899Paternally-induced transgenerational environmental reprogramming of metabolic gene expression in mammalsDownload
mammalMus musculusHL1_siNon_smallRNAseqGSE26397The Cardiac Transcription Network Modulated by Gata4, Mef2a, Nkx2.5 and Srf, Histone Modifications and MicroRNAsDownload
mammalSus scrofa2268 AF, small RNAGSE26572A global view of the complexity of the porcine transcriptome using a full-sib pair with extreme phenotypes in growth and fat deposit by deep RNA sequencingDownload
mammalHomo sapiensHeLa ELAV1/HuR sRNA siRNA1GSE29943Unstressed HeLa cells and ELAVL1/HuR knock down conditions: polyA RNA-Seq, small RNA-Seq, and PAR-CLIPDownload
mammalHomo sapiensSkin psoriasis involved 1GSE31037Small RNA sequencing in normal and psoriatic skinDownload
mammalHomo sapiensNormal skin1GSE36236Small RNA sequencing of melanoma samples to deduce microRNA expression profilesDownload
mammalHomo sapiensembryonal tumor A17GSE39841YM500: An integrative small RNA sequencing (smRNA-seq) database for microRNA researchDownload
nematodeCaenorhabditis remaneiC. remanei adult females+malesGSE41461Analysis of miRNA, piRNA and siRNA in Caenorhabditis speciesDownload
mammalHomo sapiensNormal Brain 2GSE43335Small RNA-seq of undiseased human brainDownload
mammalHomo sapienscontrol sample 0GSE46579A blood based 12-miRNA signature of Alzheimer patientsDownload
mammalMus musculusAbundance of piRNAs in mouse testesGSE5026Characterization of the piRNA Complex from Rat TestesDownload
nematodeCaenorhabditis elegansMIT/WI Bartel C.elegans 454 2006GSE5990High-throughput sequencing of small RNAs from Caenorhabditis elegansDownload
mammalMus musculusDevelopmentally regulated piRNA clusters implicate MILI in transposon controlGSE7414Developmentally regulated piRNA clusters implicate MILI in transposon control Download
insectDrosophila melanogasterimaginal discsGSE7448High-throughput sequencing of small RNAs from DrosophilaDownload
mammalHomo sapiensheartSRA012516The small RNA component from 2 individuals across 8 tissuesDownload
mammalHomo sapiensblood_leukemiaSRA029149Raw sequencing data for the MLL-rearranged precursor B-ALL-representing libraryDownload
   

Cancer Small RNA Download Table:


Source Cancer Download
TCGAACCSmallRNA datasnoRNAdatatRNAdata
TCGABLCASmallRNA datasnoRNAdatatRNAdata
TCGABRCASmallRNA datasnoRNAdatatRNAdata
TCGACESCSmallRNA datasnoRNAdatatRNAdata
TCGACHOLSmallRNA datasnoRNAdatatRNAdata
TCGACOADSmallRNA datasnoRNAdatatRNAdata
TCGADLBCSmallRNA datasnoRNAdatatRNAdata
TCGAESCASmallRNA datasnoRNAdatatRNAdata
TCGAGBMSmallRNA datasnoRNAdatatRNAdata
TCGAHNSCSmallRNA datasnoRNAdatatRNAdata
TCGAKICHSmallRNA datasnoRNAdatatRNAdata
TCGAKIRCSmallRNA datasnoRNAdatatRNAdata
TCGAKIRPSmallRNA datasnoRNAdatatRNAdata
TCGALAMLSmallRNA datasnoRNAdatatRNAdata
TCGALGGSmallRNA datasnoRNAdatatRNAdata
TCGALIHCSmallRNA datasnoRNAdatatRNAdata
TCGALUADSmallRNA datasnoRNAdatatRNAdata
TCGALUSCSmallRNA datasnoRNAdatatRNAdata
TCGAMESOSmallRNA datasnoRNAdatatRNAdata
TCGAOVSmallRNA datasnoRNAdatatRNAdata
TCGAPAADSmallRNA datasnoRNAdatatRNAdata
TCGAPCPGSmallRNA datasnoRNAdatatRNAdata
TCGAPRADSmallRNA datasnoRNAdatatRNAdata
TCGAREADSmallRNA datasnoRNAdatatRNAdata
TCGASARCSmallRNA datasnoRNAdatatRNAdata
TCGASKCMSmallRNA datasnoRNAdatatRNAdata
TCGASTADSmallRNA datasnoRNAdatatRNAdata
TCGATGCTSmallRNA datasnoRNAdatatRNAdata
TCGATHCASmallRNA datasnoRNAdatatRNAdata
TCGATHYMSmallRNA datasnoRNAdatatRNAdata
TCGAUCECSmallRNA datasnoRNAdatatRNAdata
TCGAUCSSmallRNA datasnoRNAdatatRNAdata
TCGAUVMSmallRNA datasnoRNAdatatRNAdata

   

Exosomes RNA Download Table:


type strand Download
mRNAsenseDownload
mRNAantisenseDownload
lncRNAsenseDownload
lncRNAantisenseDownload
miRNAsenseDownload
miRNAantisenseDownload
circRNAsenseDownload
circRNAantisenseDownload

   

tRFs Annotation Download Table:


Source cancer Download
TCGAACCDownload
TCGABLCADownload
TCGABRCADownload
TCGACESCDownload
TCGACHOLDownload
TCGACOADDownload
TCGADLBCDownload
TCGAESCADownload
TCGAGBMDownload
TCGAHNSCDownload
TCGAKICHDownload
TCGAKIRCDownload
TCGAKIRPDownload
TCGALGGDownload
TCGALIHCDownload
TCGALUADDownload
TCGALUSCDownload
TCGAMESODownload
TCGAOVDownload
TCGAPAADDownload
TCGAPCPGDownload
TCGAPRADDownload
TCGAREADDownload
TCGASARCDownload
TCGASKCMDownload
TCGASTADDownload
TCGATGCTDownload
TCGATHCADownload
TCGATHYMDownload
TCGAUCECDownload
TCGAUCSDownload
TCGAUVMDownload