circRNA Expression

Clade:


Species:


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User Guide

  • Users can choose Clade and Species to see the result tables by changing the values in the select box and click the "Choose" button.

  • Here we use a "blue-white-red" heatmap table to show the expression value of lncRNAs in each dataset. The color scale are shown in corlor bar. The gene expression value are normalized by z-score or log2(FPKM)-mean .

  • Click the name or gene symbol of the circRNA to see detailed expression analysis of selected genes.

  •    Expression Normalization: Z-score  

    References:

    Djebali S, Davis CA, Merkel A, Dobin A, Lassmann T, Mortazavi A, Tanzer A,Lagarde J, Lin W, Schlesinger F, Xue C, Marinov GK, Khatun J, Williams BA,Zaleski C, Rozowsky J, Rder M, Kokocinski F, Abdelhamid RF, Alioto T,Antoshechkin I, Baer MT, Bar NS, Batut P, Bell K, Bell I, Chakrabortty S, Chen X,Chrast J, Curado J, Derrien T, Drenkow J, Dumais E, Dumais J, Duttagupta R,Falconnet E, Fastuca M, Fejes-Toth K, Ferreira P, Foissac S, Fullwood MJ, Gao H, Gonzalez D, Gordon A, Gunawardena H, Howald C, Jha S, Johnson R, Kapranov P, KingB, Kingswood C, Luo OJ, Park E, Persaud K, Preall JB, Ribeca P, Risk B, Robyr D, Sammeth M, Schaffer L, See LH, Shahab A, Skancke J, Suzuki AM, Takahashi H,Tilgner H, Trout D, Walters N, Wang H, Wrobel J, Yu Y, Ruan X, Hayashizaki Y,Harrow J, Gerstein M, Hubbard T, Reymond A, Antonarakis SE, Hannon G, GiddingsMC, Ruan Y, Wold B, Carninci P, Guig R, Gingeras TR. Landscape of transcription in human cells. Nature2012 Sep 6;489(7414):101-8. [link to Pubmed]