| ClusterID | miRNAID | miRNA | GeneID | GeneName | GeneType | TargetSite(Narrow) | narrowStart | narrowEnd | strand | TargetSite(Broad) | broadEnd | PITA | RNA22 | miRmap | microT | miRanda | PicTar | TargetScan | PITASeqStats | RNA22SeqStats | miRmapSeqStats | microTSeqStats | mirandaSeqStats | pictarSeqStats | TargetScanSeqStats | TDMDScore | AgoExpNum | CleaveExpNum | AGOStats | AGOclipNum | phyloP | Pan-Cancer | lineID |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ClusterID | miRNAID | miRNA | GeneID | GeneName | GeneType | TargetSite(Narrow) | narrowStart | narrowEnd | strand | TargetSite(Broad) | broadEnd | PITA | RNA22 | miRmap | microT | miRanda | PicTar | TargetScan | PITASeqStats | RNA22SeqStats | miRmapSeqStats | microTSeqStats | mirandaSeqStats | pictarSeqStats | TargetScanSeqStats | TDMDScore | AgoExpNum | CleaveExpNum | AGOStats | AGOclipNum | phyloP | Pan-Cancer | lineID |
Here, we presented the miRNA-target interactions by intersecting the predicting target sites of miRNAs with binding sites of Ago protein, which were derived from CLIP-seq data.
We also introduced a new algorithm called TDMDScore to systematically scan the miRNA-target interactions and evaluated the potential interactions that triggered target-directed microRNA degradation (TDMD).
A higher TDMDScore indicates that the miRNA-target is more likely to trigger the TDMD.
You can search the interactions of miRNA-target by selecting one/multiple target-predicting programs (PITA, RNA22, miRmap, DIANA-microT, miRanda, PicTar and TargetScan).
Select the miRNA: all
Select the target: PDCD4
Refine results with high stringency of CLIP Data: 3
Refine results with used Predicting Program: 2
Explore the interaction of miRNA-mRNA with Pan-Cancer analysis: 5
Users can filter the results by searching in the table. The searchable columns are allowed using comparison operators like ">=", "<=", ">", "<" and "=". The ">=" is set by default.