miRNA: all
CLIP-Data >= 1
Degradome-Data >= 0
pan-Cancer >= 0
target: SKP1P1

The miRNA-pseudogene Interactions Supported by Ago CLIP-seq Data

Download: EXCEL TXT
BindID miRNAID miRNA GeneID GeneName GeneType TargetSite Start End strand Alignment align targetSeq Type TDMDScore AgoExpNum CleaveExpNum AGOStats AGOclipNum phyloP Pan-Cancer lineID
BindID miRNAID miRNA GeneID GeneName GeneType TargetSite Start End strand Alignment align targetSeq Type TDMDScore AgoExpNum CleaveExpNum AGOStats AGOclipNum phyloP Pan-Cancer lineID

Description:

Here, we presented the miRNA-target interactions by intersecting the predicting target sites of miRNAs with binding sites of Ago protein, which were derived from CLIP-seq data.

We also introduced a new algorithm called TDMDScore to systematically scan the miRNA-target interactions and evaluated the potential interactions that triggered target-directed microRNA degradation (TDMD).

A higher TDMDScore indicates that the miRNA-target is more likely to trigger the TDMD.

The interactions of miRNA-pseudogene were predicted by using miRanda program.


Usage:

Select the miRNA: all
Select the target: SKP1P1
Refine results with high stringency of CLIP Data: 3
Explore the interaction of miRNA-pseudogene with Pan-Cancer analysis: 5
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