How to cite
- Zhou KR, Liu S, Li B, Liu SR, Cai L, et al. An encyclopedia of RNA interactomes in ENCORI.
- Li JH, et al.starBase v2.0: decoding miRNA-ceRNA, miRNA-ncRNA and protein-RNA interaction networks from large-scale CLIP-Seq data , Nucleic Acids Res. 2014 Jan;42:D92-7.
Contact us
ENCORI is under constant maintenance and improvement. Any questions about the usage, comments or suggestions are appreciated.
The contact: Jian-Hua Yang (yangjh7@mail.sysu.edu.cn ) or Ke-Ren Zhou (zhoukr062@gmail.com ).
Address: RNA Information Center, State Key Laboratory for Biocontrol, Sun Yat-sen University, Guangzhou 510275, P. R. China
Our tools
We have developed several databases and software for ncRNA research.
starBase v2.0
Decoding miRNA-ceRNA, miRNA-ncRNA and protein-RNA interaction networks from large-scale CLIP-Seq data. (Li et al. Nucleic Acids Res. 2014;42:D92-7)
ChIPBase v2.0
Decoding transcriptional regulatory networks of non-coding RNAs and protein-coding genes from ChIP-seq data. (Zhou et al. Nucleic Acids Res. 2017;45(D1):D43-D50)
RMBase v2.0
Deciphering the Map of RNA Modifications from Epitranscriptome Sequencing Data. (Sun et al. Nucleic Acids Res. 2015; doi: 10.1093/nar/gkv1036.)
deepBase v3.0
deepBase v3. 0: expression atlas and interactive analysis of ncRNAs from thousands of deep-sequencing data. (Xie et al. Nucleic Acids Res. 2021 Jan 8;49(D1):D877-D883.)
dreamBase
DNA modification, RNA regulation and protein binding of expressed pseudogenes in human health and disease. (Zheng et al. Nucleic Acids Res. 2018 Jan 4;46(D1):D85-D91.)
tRF2Cancer
A web server to detect tRNA-derived small RNA fragments (tRFs) and their expression in multiple cancers. (Zheng et al. Nucleic Acids Res. 2016 Jul 8;44(W1):W185-93.)