An encyclopedia of RNA interactomes in ENCORI

Pan-Cancer Co-Expression Analysis for the RNA-RNA interactions across 32 types of cancers

Query Gene(lncRNA,mRNA,ncRNA,etc.):

Target Gene(lncRNA,mRNA,ncRNA,etc.):

Co-Expression Table of Pan-Cancer Analysis for
IGF2BP3
and
MYC

Cancer	CancerFullName	SampleNum	Coefficient-R	p-value

Co-Expression Analysis for
IGF2BP3
and
MYC

Cancer:

Chart type:

Data scale:

Description:

Here, we performed survival analysis of miRNAs across 32 types of cancers (10,882 RNA-seq samples).
The expression data of cancers were downloaded from TCGA project via Genomic Data Commons Data Portal.
The expression values of genes from RNA-seq data were scaled with log2(FPKM + 0.01).

Usage:

Select a Cancer: UCEC
Select the Chart type: Scatter plot
Select the Data scale method: log2(FPKM + 0.01)
Users can click the cancer name on the Pan-Cancer table to quickly browse the corresponding Co-Expression profile.